rs28044422 SNP Detail

Summary

• ID
  rs28044422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:73961548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAAGCAT AGCTATCTAC
  AGATAGAACT TATTTTATCA ATTTAAAAAT AGACCTTCCA GGTTTTACCT ATTTGGAGTA
  ATATCATGCA TACTTATCTA TCCCATACTC TGTAGCTTAC TTTAGAAAAT ACATTTGCTT
  TTCTTTTTTT AGAAAATTCT GTCAGGTTGT TTTCTTGATT CAGGCCTTTT CTTAATATGG
  Y
  TACTAGTAAT TTAGAAAGAA TTTTTAGATT TTTTTTTCCT GGCACTTCCA GCCTCTCTGT
  GAGTTTGCTT ATAGTATCAG AACAGGCAGT GTGTGGGAGG TGAAGCTGAA AGTAGAGGCT
  GATGCTGAAA AATAATGCAC TCTTCCCTGT GCCCTCACAT GCCCTCCTTA TCTGTTTTTC
  TCCCACACAG CCTTTTGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38190950	NES09619598	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28044422					SNP	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38190950	NES09619598	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:73961548 () rs orientation: forward

Symbol	Name	Function Class
Frmd3	FERM domain containing 3	within coordinates
Gm11760	predicted gene 11760	1077 bp upstream
Tssr1205	transcription start site region 1205	122 bp downstream