rs28044424 SNP Detail

Summary

• ID
  rs28044424
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:73961459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAAATCA CAGGACAAGC
  AGAGGGAAAT TATTTATGTT CCTTACTAAA CACTCACTTG TATGGTCCTT TTAGGATGTC
  ATCTGTCAAT GACAAGCATA GCTATCTACA GATAGAACTT ATTTTATCAA TTTAAAAATA
  GACCTTCCAG GTTTTACCTA TTTGGAGTAA TATCATGCAT ACTTATCTAT CCCATACTCT
  S
  TAGCTTACTT TAGAAAATAC ATTTGCTTTT CTTTTTTTAG AAAATTCTGT CAGGTTGTTT
  TCTTGATTCA GGCCTTTTCT TAATATGGTT ACTAGTAATT TAGAAAGAAT TTTTAGATTT
  TTTTTTCCTG GCACTTCCAG CCTCTCTGTG AGTTTGCTTA TAGTATCAGA ACAGGCAGTG
  TGTGGGAGGT GAAGCTGAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38190952	NES09619596	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28044424					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38190952	NES09619596	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:73961459 () rs orientation: forward

Symbol	Name	Function Class
Frmd3	FERM domain containing 3	within coordinates
Gm11760	predicted gene 11760	1166 bp upstream
Tssr1205	transcription start site region 1205	211 bp downstream