rs28044645 SNP Detail

Summary

• ID
  rs28044645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84433664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGT AAGAGAACCA AGGTAAGACT
  Y
  TCTAAGTGTG TGCCAGATGG AAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss38173177	NES09247604	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T		C	C	T		C	T	C	C
ss45254295	mCV23587973	ABI	CRAMUS_MOUSE	f	SNP		T	C				T	C
ss146833236	ENSMUSSNP5676496	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
ss320371772	CHEV_2_84443477	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs28044645					SNP	T	T	C	C	C	T	T	C	C	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38173177	NES09247604	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84433664 () rs orientation: forward

Symbol	Name	Function Class
Ctnnd1	catenin delta 1	within coordinates
Gm28635	predicted gene 28635	within coordinates
Tssr25005	transcription start site region 25005	1829 bp upstream
Tssr25006	transcription start site region 25006	1773 bp upstream