rs28044646 SNP Detail

Summary

• ID
  rs28044646
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84433653 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATCAGCATG ATTGGCAAAG
  AGTAGGCACA CAGCAACCTC CTTCCTCAGG ACCATCTTAG GGGTGACTGG AGGACATACC
  ATGGGGGAGT AAGACACTTG GTTCCCCTCA TCATCCAAAA CCAACACATC CAACTCTTCC
  TCCAAAGATT CCTGCCCCTC GTCCTGCTGT GAACACATGC AATTTGTTAG TAAGAGAACC
  M
  AGGTAAGACT TTCTAAGTGT GTGCCAGATG GAAGGGAAAT CCCAACATCT GTAAAGTGAA
  CAAACCCTGT TAAGAGTACA GGGCAAACAT CCTAAACAGG TAAGTGCAAG AGCAGGGAGA
  TGTCCTCGAG AGCAGGTTAG TTAGTGTCAG TGACGTCAGC AACGCTTGCA AAATCCATCC
  ACACAACCAA TGAGCAACAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38173178	NES09247603	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28044646					SNP	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38173178	NES09247603	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84433653 () rs orientation: forward

Symbol	Name	Function Class
Ctnnd1	catenin delta 1	within coordinates
Gm28635	predicted gene 28635	within coordinates
Tssr25005	transcription start site region 25005	1818 bp upstream
Tssr25006	transcription start site region 25006	1762 bp upstream