rs28044647 SNP Detail

Summary

• ID
  rs28044647
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84432082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCCCTCC TAACAGCCTC
  ACTTTGAGAC TTATCGGGAT GGATTTTCAC CAATCCCAAC TGCACACTGT TAAGCAGAAG
  CCTGTTGTGG CTATGTCAGA GGCTTTAACA ACACCCAGTA GGGACGTGAA GTTCCCTAAG
  TTACCACTCC TCTTCTTTGC TTCAGCTACT GGGGGTCAAC AGTGGGTAAG AAAATAACAA
  R
  GTCTAACTTG CAAAATCATG AGAAATGAGA CTGCAGAGGC AAAGAAAGGC ACCTGGAAGA
  GAGGGAGGAG ATGCACCCCA GGCCAAAGGC ACAAAGAAGA GGCAAAGCCA GGGCAACTCC
  TACCTTACAA GGGCAAAGGG GGAGGAGCTA TGTACAAGTC TTGTAAGTTG GCCAACAAAT
  CCAGGGAAGG GGAGGAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38173182	NES09247599	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28044647					SNP	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38173182	NES09247599	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84432082 () rs orientation: forward

Symbol	Name	Function Class
Ctnnd1	catenin delta 1	within coordinates
Gm28635	predicted gene 28635	within coordinates
Tssr25005	transcription start site region 25005	247 bp upstream
Tssr25006	transcription start site region 25006	191 bp upstream