rs28044658 SNP Detail

Summary

• ID
  rs28044658
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84429915 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTC AGTCCAACAT TTCAGTTTGG
  S
  TCTGAGCATG AATAACTGAT TCGTT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38173194	NES09247623	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	G	C	G		C	G	G	C		G	C	G	G		G
ss45206676	mCV23587976	ABI	CRAMUS_MOUSE	f	SNP	C	C	G					C		G
ss146833206	ENSMUSSNP5481520	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G							G
ss320371769	CHEV_2_84439728	CHEVERUD	SCREENING_POP	f	SNP													C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28044658					SNP	C	C	G	G	G	C	G	C	C	G	G	C	C	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38173194	NES09247623	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84429915 () rs orientation: forward

Symbol	Name	Function Class
Ctnnd1	catenin delta 1	500 bp downstream
Gm28635	predicted gene 28635	1868 bp downstream
Tssr25005	transcription start site region 25005	1886 bp downstream
Tssr25006	transcription start site region 25006	1945 bp downstream