rs28044659 SNP Detail

Summary

• ID
  rs28044659
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84429884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTTTCTT AATGTTAGTA
  TGAGTGAGAA GTATCAAGAG GGCTGCCTCT AAAGCACTGT CAAGTCTGCC AAGAAACTCA
  GGCATGGTGG CAGTATAATC TCAGCACCTG GGAAGGGTTG CCACAAGCTC AAGGTCAAAC
  TGGTCGGGCT AGCTACACAG TGAGGCCCTG GCTTTCAAAA CCAATCAAAC CATATTTGGC
  R
  CTTATAGGTC AGTCCAACAT TTCAGTTTGG CTCTGAGCAT GAATAACTGA TTCGTTGACT
  GACCAAGACA AAGTCTTGCT ATGTAGTCCA GGCTGGTGTC TGTCACCCGA GTGCTGGGAT
  TAGCAGTACA TACCACTAGG GCTGGCTTGA TCTAGACCTT TGAAAACTCT GTAGAGGAAC
  ATGGTGACTG GCACCTACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38173195	NES09247622	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28044659					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38173195	NES09247622	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84429884 () rs orientation: forward

Symbol	Name	Function Class
Ctnnd1	catenin delta 1	531 bp downstream
Gm28635	predicted gene 28635	1899 bp downstream
Tssr25005	transcription start site region 25005	1917 bp downstream
Tssr25006	transcription start site region 25006	1976 bp downstream