rs28045929 SNP Detail

Summary

• ID
  rs28045929
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84769109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGCCTTCAT TCTCTGCTGC TTATCATTTT CTGAGTTGTC
  CCACCCAATG GTGAAATTTC AGGTGCCCTC TAATTAGTCA GGAGCCTCTT ACACTGGGAG
  W
  TTCCCCTGCA AATGAGTCAG AGACCTCGTG CTCTTTTACA GGGTTCTGTT GCCTCCTGAT
  TACAGTAGTG TCCATGGCTA GGTTCATTGA TAAGCAGGT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss38172256	NES09250447	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	T	A		T		T	T		A	A		T
ss45256969	mCV23822633	ABI	CRAMUS_MOUSE	f	SNP		A					T		A
ss146835519	ENSMUSSNP6363511	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss320372229	CHEV_2_84778922	CHEVERUD	SCREENING_POP	f	SNP												A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28045929					SNP	T	A	A	A	T	A	T	T	A	T	T	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38172256	NES09250447	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84769109 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11876	CpG island 11876	1900 bp distal
Rr397102	regulatory region 397102	within coordinates
Rr397103	regulatory region 397103	163 bp upstream
Rr560389	regulatory region 560389	562 bp proximal
Slc43a3	solute carrier family 43, member 3	within coordinates
Tssr554	transcription start site region 554	1492 bp downstream
Tssr18711	transcription start site region 18711	1376 bp downstream
Tssr18712	transcription start site region 18712	1131 bp downstream
Tssr18713	transcription start site region 18713	1087 bp downstream
Tssr25061	transcription start site region 25061	337 bp upstream