rs28045930 SNP Detail

Summary

• ID
  rs28045930
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84768987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCA GTCTCTTTTC TGGCAGGGCC
  W
  CACATCTAGG TGGCTCAGGC TTTGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38172257	NES09250446	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28045930					SNP	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38172257	NES09250446	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84768987 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11876	CpG island 11876	1778 bp distal
Rr397102	regulatory region 397102	within coordinates
Rr397103	regulatory region 397103	285 bp upstream
Rr560388	regulatory region 560388	1969 bp distal
Rr560389	regulatory region 560389	684 bp proximal
Slc43a3	solute carrier family 43, member 3	within coordinates
Tssr554	transcription start site region 554	1370 bp downstream
Tssr18710	transcription start site region 18710	1931 bp downstream
Tssr18711	transcription start site region 18711	1254 bp downstream
Tssr18712	transcription start site region 18712	1009 bp downstream
Tssr18713	transcription start site region 18713	965 bp downstream
Tssr25061	transcription start site region 25061	215 bp upstream