rs28045933 SNP Detail

Summary

• ID
  rs28045933
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84766983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAT GAGAGCGGGA AACCGGCCCA
  W
  CGCGGGTAGG ACTGGAAGGA TACTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38172260	NES09250443	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28045933					SNP	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38172260	NES09250443	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84766983 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11876	CpG island 11876	within coordinates
Rr57133	regulatory region 57133	982 bp distal
Rr57134	regulatory region 57134	within coordinates
Rr397102	regulatory region 397102	1976 bp upstream
Slc43a3	solute carrier family 43, member 3	within coordinates
Tssr554	transcription start site region 554	611 bp upstream
Tssr18709	transcription start site region 18709	33 bp downstream
Tssr18710	transcription start site region 18710	within coordinates
Tssr18711	transcription start site region 18711	730 bp upstream
Tssr18712	transcription start site region 18712	975 bp upstream
Tssr18713	transcription start site region 18713	1013 bp upstream
Tssr25061	transcription start site region 25061	1777 bp downstream