rs28049329 SNP Detail

Summary

• ID
  rs28049329
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79292199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCGTTTC AAGAATTCAC
  CCCTAGAGTT TCACTTTCTT TAAATAAAGT CTCTTCTTTC TTTCTTTAAA AGATGCATTT
  CCACTTGAAT TAAATATTGA TAATTTGACC TTTTGTGTCT TTAATTCATC AAAGTGGGAA
  AATTCCAAAT GTAGATCTTG GAGGTAGGCC CTGGTGGGTC TTTCCACTTG AATAGACACC
  R
  AGATTAAAGG AGTCCAACTT CCTCTTTCAC TGCTCTCTCC TTGCGCTAAT TGCTTATGCA
  AAAATGCAGA TTTGTATTAA TTAGTAACTC CACTGATTAG TTCTGTGGTA TTTTCACATA
  ATAAATCATG CTGCAGACAT GAATTTTGGC ACATCACCCC ATTGTGGCTC CGGCTGTAAT
  ACAGATTTCC TATTAAAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38186056	NES09241777	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A		A	A	G		A	A	G	A
ss146785849	ENSMUSSNP6528427	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28049329					SNP	A	A	A	A	A	A	A	A	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38186056	NES09241777	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79292199 () rs orientation: forward

Symbol	Name	Function Class
Rr559993	regulatory region 559993	within coordinates