rs28049330 SNP Detail

Summary

• ID
  rs28049330
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79292162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATTCAGA CATCATTGTC
  ATTGAAAGGC ATAATTATTT TCGTTTCAAG AATTCACCCC TAGAGTTTCA CTTTCTTTAA
  ATAAAGTCTC TTCTTTCTTT CTTTAAAAGA TGCATTTCCA CTTGAATTAA ATATTGATAA
  TTTGACCTTT TGTGTCTTTA ATTCATCAAA GTGGGAAAAT TCCAAATGTA GATCTTGGAG
  K
  TAGGCCCTGG TGGGTCTTTC CACTTGAATA GACACCAAGA TTAAAGGAGT CCAACTTCCT
  CTTTCACTGC TCTCTCCTTG CGCTAATTGC TTATGCAAAA ATGCAGATTT GTATTAATTA
  GTAACTCCAC TGATTAGTTC TGTGGTATTT TCACATAATA AATCATGCTG CAGACATGAA
  TTTTGGCACA TCACCCCATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38186057	NES09241776	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	T		G	G	T	G
ss146785845	ENSMUSSNP2142474	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G									T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28049330					SNP	G	G	G	G	G	G	G	G	G	G	T	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38186057	NES09241776	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79292162 () rs orientation: forward

Symbol	Name	Function Class
Rr559993	regulatory region 559993	within coordinates