rs28049331 SNP Detail

Summary

• ID
  rs28049331
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79291959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGATTCT GGGAAGAGCA
  AGCACCCTTA AACCAAGACA CGAGTGTTTT AGGTCTGCAA CATAGTTTGA TTGGGATTGA
  TCAAAGAAAC GCGGAAATAA AAGAAAAGAA GCCAAATTCT TTTCAGAAGC AGATTACACT
  TTAGTCAGAA CATATACTTT TTTTATTTCT AAATACGATT AGCAAACAAA CTCTTCATCC
  R
  GTGTTATTCA GACATCATTG TCATTGAAAG GCATAATTAT TTTCGTTTCA AGAATTCACC
  CCTAGAGTTT CACTTTCTTT AAATAAAGTC TCTTCTTTCT TTCTTTAAAA GATGCATTTC
  CACTTGAATT AAATATTGAT AATTTGACCT TTTGTGTCTT TAATTCATCA AAGTGGGAAA
  ATTCCAAATG TAGATCTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38186058	NES09241775	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28049331					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38186058	NES09241775	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79291959 () rs orientation: forward

Symbol	Name	Function Class
Rr559993	regulatory region 559993	175 bp proximal