rs28049338 SNP Detail

Summary

• ID
  rs28049338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79291135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA AACAAAAATC CATTGTAGCT AGATGTACTA GCTTCAGGAA
  TGAAGGGCCA GCTAGGCACA CAGGATACAC TTAACAATAG ATGACACCTT AAGATGGGGA
  AAGAGCCAAA CAAGGTTCTA AAGGCAGAAT AGAACAATAC TAGCCAGCCA AGTTTAGAGC
  Y
  CAGGCAACAG TAAGGAAATA ACTTCCTGAC AGAATCAGCA CCGTGGACAA CGCCTACCCA
  GTGGCTCCTG AAACTGCTTT CAGAATTAGA ACTCCTGTGG ATCTATCTAG TCTTCCAGTG
  TTTGTTTTTG TTTTGTTTTT ATTTTTTTCC TAATGTCTTT TTTTTTCAAA TCACTAGTCA
  TCTTTAATCT GAGAGCCTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38186065	NES09241768	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28049338					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38186065	NES09241768	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79291135 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11844	CpG island 11844	1356 bp distal
Rr559993	regulatory region 559993	999 bp proximal