rs28049360 SNP Detail

Summary

• ID
  rs28049360
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79286407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAAGATG GAGTAATTAC
  AATGGTCAGC GACTGGCAAT GGTGAAGGTG CTGCTTCTCA TAAGAACTGT AAAAAGCCTT
  TAGTAAAACA ACTGAATGTC TGGCCCCAGC ATGGGGACTT GGCCGCCTCT GGGACAGTAA
  CAGGTAGCAG GAAAATTTCC TTCCTTTTCT CCCCCTCTCC CTACATTTCA GCTAAGCTAT
  Y
  TCAGAGTCCA ATCGGTTTTC CAGTACTACA TTCTCCTGAA ATAGATAGTT TCATATGCAC
  GATGAGCCTA AATATCTGTA CACCAAATAA AACTATGGGC AGCAGGTGTT TTTGTTTGTT
  TGTTTTGTTT TGTTTTGTTT TTCTCTTTCT CTCCTTTTCT CCCCTGAATA AGTGAGAACT
  GGAAGTGGTT GTTTGCTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38186087	NES09241746	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28049360					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38186087	NES09241746	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79286407 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11842	CpG island 11842	1168 bp distal
Cpgi11843	CpG island 11843	492 bp proximal
Neurod1	neurogenic differentiation 1	within coordinates
Rr373416	regulatory region 373416	734 bp downstream
Rr559992	regulatory region 559992	678 bp proximal
Tssr24894	transcription start site region 24894	1788 bp upstream
Tssr24895	transcription start site region 24895	1747 bp upstream
Tssr24896	transcription start site region 24896	1671 bp upstream
Tssr24897	transcription start site region 24897	1389 bp upstream
Tssr24898	transcription start site region 24898	1353 bp upstream
Tssr24899	transcription start site region 24899	1101 bp upstream
Tssr24900	transcription start site region 24900	1091 bp upstream
Tssr24901	transcription start site region 24901	1071 bp upstream
Tssr24902	transcription start site region 24902	1032 bp upstream
Tssr24903	transcription start site region 24903	974 bp upstream
Tssr24904	transcription start site region 24904	238 bp downstream
Tssr24905	transcription start site region 24905	563 bp downstream
Tssr24906	transcription start site region 24906	687 bp downstream