rs28049361 SNP Detail

Summary

• ID
  rs28049361
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79285789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTACCTCGG TGCTGCGTAG
  TAGGTACCAC TAGGCCTGTC ATGAGTGGCT ATGGGTGCCT TTCCTAGTGA TCAGCTCAAC
  TGTGTGCAGG GCAATTATCT GGCCAGGTGC CCTGTGTGGA AATGCGTACA GAGTGCATGG
  TTTTCTGACT GTGTCCCAAG TCACTCCCAA CTCACAAAAA CGATGAGTTT GGAAATGGAA
  Y
  ACTCTGAACT CATCTCTGCT CTGGCTTCGC ACTACTTAGA GGTTTAAATA AATTGAAAAG
  CCATTACGTA ATTTCCTAGC ACTGACCCCA ATTTTTAAAG AAGATTATAT GGAAGGGAGA
  GCCAATGCAC AGAGGAGGAA AGGTAGTTTC CATCAAATTA TTTTCCTATC GACAACACAT
  TTGGCCACAG AAGTGGGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38186088	NES09241745	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28049361					SNP	T	T	T	T	T	T	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38186088	NES09241745	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79285789 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11842	CpG island 11842	550 bp distal
Cpgi11843	CpG island 11843	1110 bp proximal
Neurod1	neurogenic differentiation 1	within coordinates
Rr373416	regulatory region 373416	116 bp downstream
Rr559991	regulatory region 559991	1469 bp distal
Rr559992	regulatory region 559992	1296 bp proximal
Tssr24893	transcription start site region 24893	1485 bp upstream
Tssr24894	transcription start site region 24894	1170 bp upstream
Tssr24895	transcription start site region 24895	1129 bp upstream
Tssr24896	transcription start site region 24896	1053 bp upstream
Tssr24897	transcription start site region 24897	771 bp upstream
Tssr24898	transcription start site region 24898	735 bp upstream
Tssr24899	transcription start site region 24899	483 bp upstream
Tssr24900	transcription start site region 24900	473 bp upstream
Tssr24901	transcription start site region 24901	453 bp upstream
Tssr24902	transcription start site region 24902	414 bp upstream
Tssr24903	transcription start site region 24903	356 bp upstream
Tssr24904	transcription start site region 24904	856 bp downstream
Tssr24905	transcription start site region 24905	1181 bp downstream
Tssr24906	transcription start site region 24906	1305 bp downstream