rs28049363 SNP Detail

Summary

• ID
  rs28049363
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79285705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACAAATA GAAATACACA
  GGAGTCCACT GCAAAATGGA TGCCTCCAGG AAAAGTTAAA CGCAGTGCTT CATGCTGGCG
  TGTCTGTACC TCGGTGCTGC GTAGTAGGTA CCACTAGGCC TGTCATGAGT GGCTATGGGT
  GCCTTTCCTA GTGATCAGCT CAACTGTGTG CAGGGCAATT ATCTGGCCAG GTGCCCTGTG
  Y
  GGAAATGCGT ACAGAGTGCA TGGTTTTCTG ACTGTGTCCC AAGTCACTCC CAACTCACAA
  AAACGATGAG TTTGGAAATG GAATACTCTG AACTCATCTC TGCTCTGGCT TCGCACTACT
  TAGAGGTTTA AATAAATTGA AAAGCCATTA CGTAATTTCC TAGCACTGAC CCCAATTTTT
  AAAGAAGATT ATATGGAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38186090	NES09241743	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28049363					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38186090	NES09241743	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79285705 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11842	CpG island 11842	466 bp distal
Cpgi11843	CpG island 11843	1194 bp proximal
Neurod1	neurogenic differentiation 1	within coordinates
Rr373416	regulatory region 373416	32 bp downstream
Tssr24893	transcription start site region 24893	1401 bp upstream
Tssr24894	transcription start site region 24894	1086 bp upstream
Tssr24895	transcription start site region 24895	1045 bp upstream
Tssr24896	transcription start site region 24896	969 bp upstream
Tssr24897	transcription start site region 24897	687 bp upstream
Tssr24898	transcription start site region 24898	651 bp upstream
Tssr24899	transcription start site region 24899	399 bp upstream
Tssr24900	transcription start site region 24900	389 bp upstream
Tssr24901	transcription start site region 24901	369 bp upstream
Tssr24902	transcription start site region 24902	330 bp upstream
Tssr24903	transcription start site region 24903	272 bp upstream
Tssr24904	transcription start site region 24904	940 bp downstream
Tssr24905	transcription start site region 24905	1265 bp downstream
Tssr24906	transcription start site region 24906	1389 bp downstream