rs28049364 SNP Detail

Summary

• ID
  rs28049364
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79285674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCTCCCT CTCCCTAATC
  CTACAGAAAT GCACACAAAT AGAAATACAC AGGAGTCCAC TGCAAAATGG ATGCCTCCAG
  GAAAAGTTAA ACGCAGTGCT TCATGCTGGC GTGTCTGTAC CTCGGTGCTG CGTAGTAGGT
  ACCACTAGGC CTGTCATGAG TGGCTATGGG TGCCTTTCCT AGTGATCAGC TCAACTGTGT
  K
  CAGGGCAATT ATCTGGCCAG GTGCCCTGTG TGGAAATGCG TACAGAGTGC ATGGTTTTCT
  GACTGTGTCC CAAGTCACTC CCAACTCACA AAAACGATGA GTTTGGAAAT GGAATACTCT
  GAACTCATCT CTGCTCTGGC TTCGCACTAC TTAGAGGTTT AAATAAATTG AAAAGCCATT
  ACGTAATTTC CTAGCACTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38186091	NES09241742	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28049364					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38186091	NES09241742	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79285674 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11842	CpG island 11842	435 bp distal
Cpgi11843	CpG island 11843	1225 bp proximal
Neurod1	neurogenic differentiation 1	within coordinates
Rr373416	regulatory region 373416	1 bp downstream
Rr559991	regulatory region 559991	1354 bp distal
Rr559992	regulatory region 559992	1411 bp proximal
Tssr24893	transcription start site region 24893	1370 bp upstream
Tssr24894	transcription start site region 24894	1055 bp upstream
Tssr24895	transcription start site region 24895	1014 bp upstream
Tssr24896	transcription start site region 24896	938 bp upstream
Tssr24897	transcription start site region 24897	656 bp upstream
Tssr24898	transcription start site region 24898	620 bp upstream
Tssr24899	transcription start site region 24899	368 bp upstream
Tssr24900	transcription start site region 24900	358 bp upstream
Tssr24901	transcription start site region 24901	338 bp upstream
Tssr24902	transcription start site region 24902	299 bp upstream
Tssr24903	transcription start site region 24903	241 bp upstream
Tssr24904	transcription start site region 24904	971 bp downstream
Tssr24905	transcription start site region 24905	1296 bp downstream
Tssr24906	transcription start site region 24906	1420 bp downstream