rs28049365 SNP Detail

Summary

• ID
  rs28049365
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79285507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATCTGTC CAGCTTGGGG
  GACCTTGGGG CTGAGGCTCG CCCATCAGCC CGCTCTCGCT GTATGATTTG GTCATGTTTC
  CACTTCCTGT ATTGAACAGG GAGAGAGGCA AGCAGAAGAA GAAAGGGGGG GAAATCCACC
  CGCTATATTT AAAAGCTGGA TAAGCCTTCA GCTCCCTCTC CCTAATCCTA CAGAAATGCA
  Y
  ACAAATAGAA ATACACAGGA GTCCACTGCA AAATGGATGC CTCCAGGAAA AGTTAAACGC
  AGTGCTTCAT GCTGGCGTGT CTGTACCTCG GTGCTGCGTA GTAGGTACCA CTAGGCCTGT
  CATGAGTGGC TATGGGTGCC TTTCCTAGTG ATCAGCTCAA CTGTGTGCAG GGCAATTATC
  TGGCCAGGTG CCCTGTGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38186092	NES09241741	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28049365					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38186092	NES09241741	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79285507 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11842	CpG island 11842	268 bp distal
Cpgi11843	CpG island 11843	1392 bp proximal
Neurod1	neurogenic differentiation 1	within coordinates
Rr373416	regulatory region 373416	within coordinates
Tssr24892	transcription start site region 24892	1946 bp upstream
Tssr24893	transcription start site region 24893	1203 bp upstream
Tssr24894	transcription start site region 24894	888 bp upstream
Tssr24895	transcription start site region 24895	847 bp upstream
Tssr24896	transcription start site region 24896	771 bp upstream
Tssr24897	transcription start site region 24897	489 bp upstream
Tssr24898	transcription start site region 24898	453 bp upstream
Tssr24899	transcription start site region 24899	201 bp upstream
Tssr24900	transcription start site region 24900	191 bp upstream
Tssr24901	transcription start site region 24901	171 bp upstream
Tssr24902	transcription start site region 24902	132 bp upstream
Tssr24903	transcription start site region 24903	74 bp upstream
Tssr24904	transcription start site region 24904	1138 bp downstream
Tssr24905	transcription start site region 24905	1463 bp downstream
Tssr24906	transcription start site region 24906	1587 bp downstream