rs28049366 SNP Detail

Summary

• ID
  rs28049366
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79285437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCATTCAT GGCTTCAAGC
  TCGTCCTCTT TCTTGTCTGC CTCGTGTTCC TCGTCCTGAG AACTGAGACA CTCATCTGTC
  CAGCTTGGGG GACCTTGGGG CTGAGGCTCG CCCATCAGCC CGCTCTCGCT GTATGATTTG
  GTCATGTTTC CACTTCCTGT ATTGAACAGG GAGAGAGGCA AGCAGAAGAA GAAAGGGGGG
  R
  AAATCCACCC GCTATATTTA AAAGCTGGAT AAGCCTTCAG CTCCCTCTCC CTAATCCTAC
  AGAAATGCAC ACAAATAGAA ATACACAGGA GTCCACTGCA AAATGGATGC CTCCAGGAAA
  AGTTAAACGC AGTGCTTCAT GCTGGCGTGT CTGTACCTCG GTGCTGCGTA GTAGGTACCA
  CTAGGCCTGT CATGAGTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38186093	NES09241740	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28049366					SNP	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38186093	NES09241740	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79285437 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11842	CpG island 11842	198 bp distal
Cpgi11843	CpG island 11843	1462 bp proximal
Neurod1	neurogenic differentiation 1	within coordinates
Rr373416	regulatory region 373416	within coordinates
Rr559991	regulatory region 559991	1117 bp distal
Rr559992	regulatory region 559992	1648 bp proximal
Tssr24892	transcription start site region 24892	1876 bp upstream
Tssr24893	transcription start site region 24893	1133 bp upstream
Tssr24894	transcription start site region 24894	818 bp upstream
Tssr24895	transcription start site region 24895	777 bp upstream
Tssr24896	transcription start site region 24896	701 bp upstream
Tssr24897	transcription start site region 24897	419 bp upstream
Tssr24898	transcription start site region 24898	383 bp upstream
Tssr24899	transcription start site region 24899	131 bp upstream
Tssr24900	transcription start site region 24900	121 bp upstream
Tssr24901	transcription start site region 24901	101 bp upstream
Tssr24902	transcription start site region 24902	62 bp upstream
Tssr24903	transcription start site region 24903	4 bp upstream
Tssr24904	transcription start site region 24904	1208 bp downstream
Tssr24905	transcription start site region 24905	1533 bp downstream
Tssr24906	transcription start site region 24906	1657 bp downstream