rs28049367 SNP Detail

Summary

• ID
  rs28049367
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79284140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACATA AGGTGAACAG GAACTTTGAT
  Y
  CCCTGTTTCT TCCAAAGGCA GTAAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss38186094	NES09241841	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs28049367					SNP	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38186094	NES09241841	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79284140 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11842	CpG island 11842	98 bp proximal
Neurod1	neurogenic differentiation 1	within coordinates
Rr373416	regulatory region 373416	within coordinates
Rr559991	regulatory region 559991	within coordinates
Tssr24891	transcription start site region 24891	1834 bp upstream
Tssr24892	transcription start site region 24892	579 bp upstream
Tssr24893	transcription start site region 24893	120 bp downstream
Tssr24894	transcription start site region 24894	457 bp downstream
Tssr24895	transcription start site region 24895	511 bp downstream
Tssr24896	transcription start site region 24896	589 bp downstream
Tssr24897	transcription start site region 24897	853 bp downstream
Tssr24898	transcription start site region 24898	903 bp downstream
Tssr24899	transcription start site region 24899	1154 bp downstream
Tssr24900	transcription start site region 24900	1169 bp downstream
Tssr24901	transcription start site region 24901	1190 bp downstream
Tssr24902	transcription start site region 24902	1225 bp downstream
Tssr24903	transcription start site region 24903	1276 bp downstream