rs28054437 SNP Detail

Summary

• ID
  rs28054437
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:61481421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCTTTCTT CCAGATTCAG
  GTTCTTTCAC AGAAATATTC CTTTTTGTTA GGAAGAAAAA AAGTTTTGTT TAATTTCTGA
  AGGTAAATGC TAAGTGTAGA AATGTTAAAA TAAATAGAAG CATCTCATTA GAACTTTCAA
  ACATTTGATT TTCTATCAGA TTAAAAAAAA TACTTAATAC CTTTGGTTTA CGTATTCCTA
  K
  CAGTTATAGG CTTTTTGAAC AGCATGGAAA GAAGCAATAG TGAAGCTGTA GGATGTCTTA
  GTAGTGGGCG TAAGTAGAGA TTCTGACAAG TCTTAATTAT TAACTCTCTT ATGTTCCACC
  CTGTACCTTA TTTCACTTTA TGGTCTCAGC TATAGTTGCT ACCAAATGAA ACAATTAAAC
  AATTTCATGT GTTGCGAGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38157362	NES09321363	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28054437					SNP	T	T	T	T	T	T	G	T	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38157362	NES09321363	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:61481421 () rs orientation: forward

Symbol	Name	Function Class
Tank	TRAF family member-associated Nf-kappa B activator	within coordinates
Tssr17922	transcription start site region 17922	1229 bp downstream
Tssr17923	transcription start site region 17923	1082 bp downstream
Tssr17924	transcription start site region 17924	979 bp downstream
Tssr17925	transcription start site region 17925	991 bp upstream