rs28054439 SNP Detail

Summary

• ID
  rs28054439
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:61480852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATATTTTA TTATGTGTGA
  ACACACATTT TATCATACAT GTACAGATAC AAATCTGTTT TAAGTTATCA GGCATCCATT
  TAAAATTAAT GACTATCCAG AGTTGAGGCT TTCAATAAAA TATGTAAGTT CTGTATTCAA
  GGACATGAAT TTTGAATGTG ACTGCGCTAA AGCTTCCTTG TGATACTGTG GCGTGGCTTT
  M
  CCTGCTTCGT CCTCTTCAAG CACAGCTTGT TGACATCAGT GCTCTAATGG ATGCTTTATT
  AAAGTCAGTT ACAGGCAGTA AATAATTTTT TTAAAACTTG TGTAGGTACA CATAATAATG
  TGTAATTTTC CATAAGTAGA TAATTGCACC AAATATTCAA AATAAACTGT CATTCAGCCT
  ACTTGTGTTA CATTTCTAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38157364	NES09321360	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28054439					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38157364	NES09321360	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:61480852 () rs orientation: forward

Symbol	Name	Function Class
Tank	TRAF family member-associated Nf-kappa B activator	within coordinates
Tssr17922	transcription start site region 17922	660 bp downstream
Tssr17923	transcription start site region 17923	513 bp downstream
Tssr17924	transcription start site region 17924	410 bp downstream
Tssr17925	transcription start site region 17925	1560 bp upstream