rs28054448 SNP Detail

Summary

• ID
  rs28054448
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:61479875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTACGTT TATATGTATA
  TATATATATA TAAAGCATTT CCCTTTTAAA CTTATTTGTC TAAGTAAGCT TACAGTTGTA
  GCTTCTTTTG CAAAGTAATT AAGTATATAT GCTGTGAGGG TTTTTAAGTG TAAAACAGCA
  TGACTGAGAA CAAGATGCTA AGCTTCCAGA GGAAGACCCA GCAGAAGACA GAGCAGTTCC
  R
  TTGCAGCCTG TACACTGTGC TCAGTTCACC TGCAGGGGCC TGCTGTTATC CTCAGGGAAG
  ACGATAGCAA ACACAAAAAT ACCAGTTGTC CTCAGTTGTT AGAAAAGCCA ATAGAAAAAA
  TAATAACCCT CTGATTAAAG CTGGTTCAAC ACTTTTTTCA ATGATTTGAA TGTGACTATT
  TGCCTTTTGT ATCTGTTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38157373	NES09321344	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28054448					SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38157373	NES09321344	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:61479875 () rs orientation: forward

Symbol	Name	Function Class
Tank	TRAF family member-associated Nf-kappa B activator	within coordinates
Tssr17922	transcription start site region 17922	298 bp upstream
Tssr17923	transcription start site region 17923	432 bp upstream
Tssr17924	transcription start site region 17924	555 bp upstream