rs28055645 SNP Detail

Summary

• ID
  rs28055645
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60029127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAATATTG AAGGTGGCTT
  AACCACATCA AAGATATTAT TAAAAATAGG GTTAGAAACA GATCTTGAAT TTCCAAAGTC
  CAGTCTTTAT AGAGCATACA GTAAATTTCA GTGCATACCT GCTAATGTTT TGTTTCAGCA
  CTGAGATGAA CAATGACCCT GAGTGTTTCT TCTTCTCTGA AGCCTAACCC TTCTTCTTGC
  M
  CAAACCTTAG TACCATATCC ACAATTTGAT TCATCCAAAA TTTCAATAAT GGGATTGCAA
  GCTGGCACAA TCACTCTAGA AATCAGTTTG GTGGTTCCTC AGAAAATGGG ACATAGTATT
  GAGAACCCAG CTATACCACT CCTAGGCATA CACCCAGAAG ATGCTCCAAC ATGTAATAAA
  GACACATGTT CCACTATGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38162376	NES09324384	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28055645					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38162376	NES09324384	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60029127 () rs orientation: forward

Symbol	Name	Function Class
Baz2b	bromodomain adjacent to zinc finger domain, 2B	within coordinates
Rr373232	regulatory region 373232	1170 bp downstream