rs28055653 SNP Detail

Summary

• ID
  rs28055653
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:60025848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTAAATAA AAGTTCAGTT
  ATTTCTCTTT TCATTGTTGG ATTGTTCTGA TTGGTTTCCT GTTTTTGTTT TTTCTTTTCA
  GTAGCTCAGC CTGCCCTTAC CTAGCGCCCT TCCTACTTCA GCCTCCCAAG ACATGAGGTC
  ATATGTCAGT CCTACCATTC CTCTTTGTAG ATCTTTTACT CACTGTAAAT CATGTTTACA
  R
  TGTGAGGTGT GGGGTTCAAA TTCATTCTTT ACATGTCAGT TTCTTTCTAC TCTGTATTGT
  TTAAAATATT TTCTTTCCTT CCTGTCTTAG CATTCTTGAA ATCAGTTAAC CATAAATAAA
  AATGTTTATG TGTCTGAAAG CAAGTAAAAC CAGAATGGCC AATACTTTTA TAAAACTGAT
  TTCTTTAGTT AGAAGAGGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38162384	NES09324452	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28055653					SNP	A	A	A	A	A	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38162384	NES09324452	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60025848 () rs orientation: forward

Symbol	Name	Function Class
Baz2b	bromodomain adjacent to zinc finger domain, 2B	within coordinates
Rr373232	regulatory region 373232	3 bp upstream