rs28063668 SNP Detail

Summary

• ID
  rs28063668
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:85304631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTAGGAG TTTAACTACA
  GACATGGCCA AATCCATCCA TGTTAGTACT TTTACATAGC TTCCCATTCG AAATAGTGTA
  ATTAGTAATA TAGACAGTAC TCTAAAGTCT TAGAATCACA GATCAGTTCT CATTCTTCAA
  ATTTAGTAAT TCCAGATTCG TGAAAACTGC TGTAATAAGG GAAAACAGGA CACAGAACAG
  W
  GGGCCCTGGC TTTGCCCTGT GTGACTGGCT CAAAGAAAAA GCATTCTATT TGCTTCTTAA
  CCCCAAATTA GAGCTAACAG TACAATTTTC ATTAAATGGT TATGTCTATT TAACAACAAA
  TTTTTAGAAA ATCATAATCT ATATTTGGTG AATTGGTGTG TAATATGCAC AGATGAGTAT
  GCTGTAAGAT CCACAGCATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38214387	NES09586944	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28063668					SNP	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38214387	NES09586944	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:85304631 () rs orientation: forward

Symbol	Name	Function Class
Rr594676	regulatory region 594676	869 bp distal
Sh3gl2	SH3-domain GRB2-like 2	within coordinates
Tssr37714	transcription start site region 37714	1701 bp upstream
Tssr37715	transcription start site region 37715	1736 bp upstream
Tssr37716	transcription start site region 37716	1830 bp upstream
Tssr37717	transcription start site region 37717	1870 bp upstream