rs28063989 SNP Detail

Summary

• ID
  rs28063989
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:87390359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGACCAT CATGTGAGGG
  ATGCCATTTG ACTTTGCTAA TTTTTGCTCA GCTTCACTCT CCTTGTCTTA AGATGTTCTT
  TCCTTCCCAT GAGTCCTTAG CTATCTTCCA CCTTCCCTTA GCCACCAGCC TGATAAGTGG
  CTCATGCCTT AGAGAGATGA CCAAGGGTTA CCTACCCAGG GCGTTCCAGC ATGCAGTGAG
  R
  AGAGGCATTT GAGGAGTTTG GAGGAAGGGC AACTTTTTGT GCGGCTTGTA TTTTGCTACC
  TTTTGTTCGT TTTCCTTCTC ATCACTTTCA AAGCGGCATT TCCATTTTGA CTTATTTCCC
  TATGCTGGCC TCAGTGTCGA GCTGTCCACC CCACCACCCT GCCATCTCTA TGGTCTGAAT
  CTTCTTGTAT CCTTTAAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38205408	NES09570856	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28063989					SNP	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38205408	NES09570856	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:87390359 () rs orientation: forward

Symbol	Name	Function Class
Rr90547	regulatory region 90547	642 bp proximal
Rr90548	regulatory region 90548	1242 bp proximal
Rr105895	regulatory region 105895	within coordinates