rs28080634 SNP Detail

Summary

• ID
  rs28080634
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:98435563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGAAGTG AGAGGGTAGG
  GGCTCTTGGG CATGAGCAAG GTGGACGCAT GCTGGAATCC TCACAGCACC TTTAGCTGGA
  GGCAGCCTTA GAGGGCTTTT AGAAAATACG GCACTTTATC AGACTGTCAA GAATGCGTTA
  GGAGTTTCTG CACCCAAATC TTTAACACCC CGTGCATGCA GCATGCTTGC CTTTCACCGT
  S
  ATGATTGAGA AGCGCATCTC CTGGGCATTT ATTAGCATTA TTTGTGGCTT CACTGTGATG
  AAAGGAGAAA GGTATTTACA TTAGAATGAA GGAATTCTGA TTAATTCTAA AGCTGAGAAA
  TCAGCATTTT GGATGTAGGT GAAAGCAGTG TATCACTAAG GAATCGGAGC AGCACACAGA
  AAGCTGCTTT TCCTAACCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38243557	NES09530029	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28080634					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38243557	NES09530029	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98435563 () rs orientation: forward

Symbol	Name	Function Class
Patj	PATJ, crumbs cell polarity complex component	Intron
Rr595752	regulatory region 595752	1617 bp distal
Rr595753	regulatory region 595753	1741 bp distal
Rr595754	regulatory region 595754	343 bp distal
Rr595755	regulatory region 595755	112 bp distal
Tssr1238	transcription start site region 1238	702 bp downstream
Tssr37887	transcription start site region 37887	671 bp downstream
Tssr37888	transcription start site region 37888	637 bp downstream
Tssr37889	transcription start site region 37889	617 bp downstream
Tssr37890	transcription start site region 37890	587 bp downstream
Tssr37891	transcription start site region 37891	563 bp downstream
Tssr37892	transcription start site region 37892	521 bp downstream
Tssr37893	transcription start site region 37893	417 bp downstream
Tssr37894	transcription start site region 37894	367 bp downstream