rs28087751 SNP Detail

Summary

• ID
  rs28087751
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:82293104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCAGAGA GAACATAGCA
  ATTTAGTAGT GAGAGGTCCA CATGTGCGAC CATGCATTCT GCCTGTGCCA CATTACAGGA
  CGCATCCCCC TTTCCACACC AGAGCTGCCA CCGTGCCCTG GGTAGGCTAC AGAGAACAGG
  AAGCTGCACC TTCAGAGACT GCATCCAGCC TGGAGCCCAC TCTGCACCAC AGAGCTGTCC
  K
  CACATTCCAG CTGTGAGGAG GAAAATGGTT TGCATTATTA ATTCAGAGTT GCAAACTAGA
  AAGGTAGTGC TTAGAAATAC ACAGAGAGAG GAAAGGAAAG TTAAATTGAG AAGAGATTTT
  AGACACAGGC AGTCACTGTG AGAGGAATAC AGACTACTTG GCTGAAGGAA CAATCATTAT
  AACAGTGCCC TGAGGTCCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38227778	NES09609887	PERLEGEN	MM_PANEL2	f	SNP	T		G	G	G	T	G		G	G	G	G		G	G	T	G		G
ss45718156	mCV23990384	ABI	CRAMUS_MOUSE	f	SNP	T	T	G					G
ss146861391	ENSMUSSNP5214607	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
ss321185596	CHEV_4_82020771	CHEVERUD	SCREENING_POP	f	SNP													G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28087751					SNP	T	T	G	G	G	T	G	G	G	G	G	G	G	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38227778	NES09609887	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82293104 () rs orientation: forward

Symbol	Name	Function Class
Nfib	nuclear factor I/B	within coordinates
Tssr1213	transcription start site region 1213	918 bp upstream
Tssr42237	transcription start site region 42237	718 bp upstream