rs28087752 SNP Detail

Summary

• ID
  rs28087752
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:82293016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCATGTGA TGTCATGGGT
  AAAAGAAAGA AAAAGGAGAG AGTCTGGTAG AGCTGCCCGG TATCCTCAAA TGCACTTTTT
  AAGCCTGTAA GGCAGAGAGA ACATAGCAAT TTAGTAGTGA GAGGTCCACA TGTGCGACCA
  TGCATTCTGC CTGTGCCACA TTACAGGACG CATCCCCCTT TCCACACCAG AGCTGCCACC
  R
  TGCCCTGGGT AGGCTACAGA GAACAGGAAG CTGCACCTTC AGAGACTGCA TCCAGCCTGG
  AGCCCACTCT GCACCACAGA GCTGTCCGCA CATTCCAGCT GTGAGGAGGA AAATGGTTTG
  CATTATTAAT TCAGAGTTGC AAACTAGAAA GGTAGTGCTT AGAAATACAC AGAGAGAGGA
  AAGGAAAGTT AAATTGAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38227779	NES09609885	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28087752					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38227779	NES09609885	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82293016 () rs orientation: forward

Symbol	Name	Function Class
Nfib	nuclear factor I/B	within coordinates
Tssr1213	transcription start site region 1213	830 bp upstream
Tssr42237	transcription start site region 42237	630 bp upstream