rs28087755 SNP Detail

Summary

• ID
  rs28087755
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:82291426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGGAAT AATACATTTT
  ACACAGTACC AGGAGAATGT GAACCTGTAA CACACGTCAG AGGGTTAGAC CCAAGGCAAA
  ACCATAAGCT ATTGAGGTCA GGAAGTTATT ATAATGACTT AGATGAACTA ATTAAAGTGA
  AAATATTTGC TAATAAACAC ACATTATAAT TTAGCACCAA TTATCTTCTT TTGAAAAGAC
  R
  TTGCTTATTT TCTTTTAATT AAGAGTAATG CCCCGAAGGT CTGGAGCCTC TGCACTCAGT
  CATATACCCA TTCATTCATT CCTCTGTCTT TTCCTCTACA TCTGGGTCTT AAACATTCCT
  AGCTACTTCT CCCTCTCTGA ATGAAGGGCA ACAGTCTGTG TGTATGGGTG GGTGGGAGAC
  TCCTGGATAT CACCTAGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38227782	NES09609944	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A	A	A		G	A	G	G		A
ss146861386	ENSMUSSNP3512237	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				A
ss321185595	CHEV_4_82019093	CHEVERUD	SCREENING_POP	f	SNP									A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28087755					SNP	G	A	A	A	G	A	A	A	A	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38227782	NES09609944	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82291426 () rs orientation: forward

Symbol	Name	Function Class
Nfib	nuclear factor I/B	within coordinates
Tssr1213	transcription start site region 1213	721 bp downstream
Tssr42237	transcription start site region 42237	922 bp downstream