rs28095124 SNP Detail

Summary

• ID
  rs28095124
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:86589364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACAGCAACA GTGCTGGGCC CTACTAACCG GGGCTTGTGG
  AAGGTGCCTT TGGAGCTATG GAATTTGAAC TCTGGGCAGC ACTCACCTCC ACGTCAATCA
  Y
  TTCCCCAAAG TTGCATACAC ACAAGCGCTG CTTACTTTTT CAAAGGTCCA AAGAGCCAAA
  CTGGCTTCAT TAATATGTGT GCCTGAATCA ATCCATTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38208255	NES09592836	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	C		C	C	T	T	C	T	T	C	T
ss45728073	mCV23030869	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					T		C
ss146919668	ENSMUSSNP6972859	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28095124					SNP	C	C	C	T	C	C	C	T	C	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38208255	NES09592836	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:86589364 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14420	CpG island 14420	953 bp distal
Plin2	perilipin 2	1067 bp upstream
Rr376780	regulatory region 376780	245 bp upstream
Rr594784	regulatory region 594784	1078 bp distal
Rr594785	regulatory region 594785	577 bp distal
Rr594786	regulatory region 594786	within coordinates
Rr594787	regulatory region 594787	694 bp proximal
Rr594788	regulatory region 594788	1450 bp proximal
Tssr1221	transcription start site region 1221	874 bp downstream
Tssr37738	transcription start site region 37738	923 bp downstream
Tssr42337	transcription start site region 42337	1666 bp upstream
Tssr42338	transcription start site region 42338	1642 bp upstream
Tssr42339	transcription start site region 42339	1620 bp upstream
Tssr42340	transcription start site region 42340	1102 bp upstream
Tssr42341	transcription start site region 42341	1084 bp upstream
Tssr42342	transcription start site region 42342	1272 bp downstream
Tssr42343	transcription start site region 42343	1431 bp downstream