rs28095125 SNP Detail

Summary

• ID
  rs28095125
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:86589314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCAGGGA ATTTCTTTCC
  TGGAAAAAGA TACAGGTGCA GGCCTTCTAG TTCCTTGCAA GGGAAACTAG AAGGAACAGT
  TGAAGATAGG AAGGAAGCTC TTGTGCCCTA GCTACATAGA TCCCCTGTCA CCAGAATATG
  TAATAAGAGC AACAGCAACA GTGCTGGGCC CTACTAACCG GGGCTTGTGG AAGGTGCCTT
  Y
  GGAGCTATGG AATTTGAACT CTGGGCAGCA CTCACCTCCA CGTCAATCAT TTCCCCAAAG
  TTGCATACAC ACAAGCGCTG CTTACTTTTT CAAAGGTCCA AAGAGCCAAA CTGGCTTCAT
  TAATATGTGT GCCTGAATCA ATCCATTGCA GGCACTGGAA GACACCACCG TATAATTATA
  AAGGAAAAAG AAAAAGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38208256	NES09592834	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28095125					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38208256	NES09592834	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:86589314 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14420	CpG island 14420	903 bp distal
Plin2	perilipin 2	1017 bp upstream
Rr376780	regulatory region 376780	295 bp upstream
Rr594784	regulatory region 594784	1028 bp distal
Rr594785	regulatory region 594785	527 bp distal
Rr594786	regulatory region 594786	within coordinates
Rr594787	regulatory region 594787	744 bp proximal
Rr594788	regulatory region 594788	1500 bp proximal
Tssr1221	transcription start site region 1221	824 bp downstream
Tssr37738	transcription start site region 37738	873 bp downstream
Tssr42337	transcription start site region 42337	1616 bp upstream
Tssr42338	transcription start site region 42338	1592 bp upstream
Tssr42339	transcription start site region 42339	1570 bp upstream
Tssr42340	transcription start site region 42340	1052 bp upstream
Tssr42341	transcription start site region 42341	1034 bp upstream
Tssr42342	transcription start site region 42342	1322 bp downstream
Tssr42343	transcription start site region 42343	1481 bp downstream