rs28095126 SNP Detail

Summary

• ID
  rs28095126
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:86587707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGACTATC AAACTGATAC
  TTGAGGGTGT TTACCACTCT TGTGAACAAG ATTGAAACCA GCAGTGGCTG CCTTAATGCT
  GACTGAGCTC AAGAAAGTCA CTCCAGGGAA CTGTAAAATC TCCTATCCCC AGTGACCCAC
  ACCCACATGA AACTGCCTTC TGCCCAGCAA CAGAACCTGT CTAGACTGCT CTGCCTCCAA
  Y
  CCAAAGTCCC AGTTCCTTAG GAAGAACTGT CCAGAAAGCA GAAGCTTCGA GCAGTATCTA
  TACCAAGGAG CAGCCCATAA AATATCTCCT TCCGTTTTCC AAGGGTGAGG TGGGGCTGAG
  GCAGAGGAGG AGCAAGAGTT TCAGCCCAGC TTGGACCATA GAGAGCCTGC GGGCAGCCAG
  TGCTGCCTAG TGGGACACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38208257	NES09592928	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28095126					SNP	C	C	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38208257	NES09592928	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:86587707 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14420	CpG island 14420	439 bp proximal
Plin2	perilipin 2	within coordinates
Rr376780	regulatory region 376780	1902 bp upstream
Rr594783	regulatory region 594783	550 bp distal
Rr594784	regulatory region 594784	within coordinates
Rr594785	regulatory region 594785	580 bp proximal
Rr594786	regulatory region 594786	1495 bp proximal
Tssr1221	transcription start site region 1221	779 bp upstream
Tssr37738	transcription start site region 37738	723 bp upstream
Tssr42335	transcription start site region 42335	910 bp upstream
Tssr42336	transcription start site region 42336	727 bp upstream
Tssr42337	transcription start site region 42337	9 bp upstream
Tssr42338	transcription start site region 42338	2 bp downstream
Tssr42339	transcription start site region 42339	22 bp downstream
Tssr42340	transcription start site region 42340	516 bp downstream
Tssr42341	transcription start site region 42341	560 bp downstream