rs28095127 SNP Detail

Summary

• ID
  rs28095127
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:86587698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGCATC AGGACTATCA
  AACTGATACT TGAGGGTGTT TACCACTCTT GTGAACAAGA TTGAAACCAG CAGTGGCTGC
  CTTAATGCTG ACTGAGCTCA AGAAAGTCAC TCCAGGGAAC TGTAAAATCT CCTATCCCCA
  GTGACCCACA CCCACATGAA ACTGCCTTCT GCCCAGCAAC AGAACCTGTC TAGACTGCTC
  Y
  GCCTCCAATC CAAAGTCCCA GTTCCTTAGG AAGAACTGTC CAGAAAGCAG AAGCTTCGAG
  CAGTATCTAT ACCAAGGAGC AGCCCATAAA ATATCTCCTT CCGTTTTCCA AGGGTGAGGT
  GGGGCTGAGG CAGAGGAGGA GCAAGAGTTT CAGCCCAGCT TGGACCATAG AGAGCCTGCG
  GGCAGCCAGT GCTGCCTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38208258	NES09592927	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28095127					SNP	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38208258	NES09592927	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:86587698 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14420	CpG island 14420	448 bp proximal
Plin2	perilipin 2	within coordinates
Rr376780	regulatory region 376780	1911 bp upstream
Rr594783	regulatory region 594783	541 bp distal
Rr594784	regulatory region 594784	within coordinates
Rr594785	regulatory region 594785	589 bp proximal
Rr594786	regulatory region 594786	1504 bp proximal
Tssr1221	transcription start site region 1221	788 bp upstream
Tssr37738	transcription start site region 37738	732 bp upstream
Tssr42335	transcription start site region 42335	901 bp upstream
Tssr42336	transcription start site region 42336	718 bp upstream
Tssr42337	transcription start site region 42337	within coordinates
Tssr42338	transcription start site region 42338	11 bp downstream
Tssr42339	transcription start site region 42339	31 bp downstream
Tssr42340	transcription start site region 42340	525 bp downstream
Tssr42341	transcription start site region 42341	569 bp downstream