rs28095129 SNP Detail

Summary

• ID
  rs28095129
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:86586426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTCGAGT ATAGGGTTGT
  TGTTGTTGTT TGTTTGTTTG TTTGTTTGTT TTTCCTTTTT GAGACACTGT CTCATACAGC
  CCAGGCAGCC TGCAGTTCAC TATGTAGCCA TGGTCTGCCT TCAACTGACA CCTCTTCACC
  TCCCTTCAAA GTGCTGGGGT GTGAGCACCA CGCCTGGCTG GGAAGTTTCT ATTAGAGTAA
  K
  AAGAGTGAGC ACCGGTATGG CTGTGAAGAG CCCATCCGTG TGAAGGAAGG TCAGCAGACA
  GTTTCTGGGT AGAGGAGGGA TTGTGCTTCA GGAAGGCCTG GGGGATCCCT GGTGTGACTT
  AGCACTCACC CTACCCAGTC CCTTGGGCTC AGTGTTGACC GCAGAATCTA GACTCACTTT
  GTGGCTCCAG CTTCTGGATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38208264	NES09593009	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28095129					SNP	T	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38208264	NES09593009	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:86586426 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14420	CpG island 14420	1720 bp proximal
Plin2	perilipin 2	within coordinates
Rr594783	regulatory region 594783	536 bp proximal
Rr594784	regulatory region 594784	875 bp proximal
Rr594785	regulatory region 594785	1861 bp proximal
Tssr42335	transcription start site region 42335	298 bp downstream
Tssr42336	transcription start site region 42336	513 bp downstream
Tssr42337	transcription start site region 42337	1261 bp downstream
Tssr42338	transcription start site region 42338	1283 bp downstream
Tssr42339	transcription start site region 42339	1303 bp downstream
Tssr42340	transcription start site region 42340	1797 bp downstream
Tssr42341	transcription start site region 42341	1841 bp downstream