rs28098614 SNP Detail

Summary

• ID
  rs28098614
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:74161096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTAATTT ATTTACTTGA
  AATCCAGACT CATGGAACTG AGGGTGTGAA CTCAGACTCA CTCATTATTT AGCCAAAGAC
  GTCTTGTATT TCTAATCCCT CTGTCCAAAT GGTAAGATTA TAGGCATATA CTATGATCAA
  CTGAGGCGGG CACACAAACA AAATGTTGGA GATATGCAGA ACCCCCTCTT CAATAGTGCA
  Y
  TCGTCAGCCT AAGACCCTCA CTTGCATGTA CTATGTATTC ACATCCCTCT CCTAAAAGTG
  TACGCAGTAA CCTCAACCCC GCACTTGCAG TCCAGCCACA TACATACACA TACTATGCTA
  GACGATGGAA TAAGTTTCTC CTCCCCTAAC AACCACAAAA CTAGGAAAGT GTCTATTTAA
  ATGTATTCTT TTTTTTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38201152	NES09615363	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28098614					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38201152	NES09615363	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:74161096 () rs orientation: forward

Symbol	Name	Function Class
Kdm4c	lysine (K)-specific demethylase 4C	Intron
Tssr37634	transcription start site region 37634	378 bp downstream