rs28098616 SNP Detail

Summary

• ID
  rs28098616
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:74160928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTATGATG AGGTCTACCT
  TGCTTAAATG TCTCTTTATC AGTACCAGGC TGCTTAATTA AGTGCATGAG GCAGACCGTG
  AATGGATGTC TACTGAGCCA TTTACTGAGT TAATGAATGA AGGATTATCA AGTATGTGCA
  TCATCAATCC GTAAGTTCTG TTTTATTTTT ATTAATTTAT TTACTTGAAA TCCAGACTCA
  W
  GGAACTGAGG GTGTGAACTC AGACTCACTC ATTATTTAGC CAAAGACGTC TTGTATTTCT
  AATCCCTCTG TCCAAATGGT AAGATTATAG GCATATACTA TGATCAACTG AGGCGGGCAC
  ACAAACAAAA TGTTGGAGAT ATGCAGAACC CCCTCTTCAA TAGTGCATTC GTCAGCCTAA
  GACCCTCACT TGCATGTACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38201154	NES09615361	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28098616					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38201154	NES09615361	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:74160928 () rs orientation: forward

Symbol	Name	Function Class
Kdm4c	lysine (K)-specific demethylase 4C	Intron
Tssr37634	transcription start site region 37634	210 bp downstream