rs28098618 SNP Detail

Summary

• ID
  rs28098618
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:74160860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAATTAG GTCAATAGGA
  ATAGTTTTGT CAGTTGGGGG CAGGGGATCC AGTGGCATCA CTGAGGCAAT TTATGATGAG
  GTCTACCTTG CTTAAATGTC TCTTTATCAG TACCAGGCTG CTTAATTAAG TGCATGAGGC
  AGACCGTGAA TGGATGTCTA CTGAGCCATT TACTGAGTTA ATGAATGAAG GATTATCAAG
  Y
  ATGTGCATCA TCAATCCGTA AGTTCTGTTT TATTTTTATT AATTTATTTA CTTGAAATCC
  AGACTCATGG AACTGAGGGT GTGAACTCAG ACTCACTCAT TATTTAGCCA AAGACGTCTT
  GTATTTCTAA TCCCTCTGTC CAAATGGTAA GATTATAGGC ATATACTATG ATCAACTGAG
  GCGGGCACAC AAACAAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38201156	NES09615359	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28098618					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38201156	NES09615359	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:74160860 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Kdm4c	lysine (K)-specific demethylase 4C			Coding-NonSynonymous
				mRNA-UTR
Tssr37634	transcription start site region 37634			142 bp downstream