rs28098620 SNP Detail

Summary

• ID
  rs28098620
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:74160758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAAAATA AAACACATCA
  TCCAAAGTGA AAAGGGATTA AGGGGATTAA AACAGGACAG CTGCTAGGCA GATAATCAAT
  CCTCTTATGT TAAATATAGC TAATGAAATT AGGTCAATAG GAATAGTTTT GTCAGTTGGG
  GGCAGGGGAT CCAGTGGCAT CACTGAGGCA ATTTATGATG AGGTCTACCT TGCTTAAATG
  W
  CTCTTTATCA GTACCAGGCT GCTTAATTAA GTGCATGAGG CAGACCGTGA ATGGATGTCT
  ACTGAGCCAT TTACTGAGTT AATGAATGAA GGATTATCAA GTATGTGCAT CATCAATCCG
  TAAGTTCTGT TTTATTTTTA TTAATTTATT TACTTGAAAT CCAGACTCAT GGAACTGAGG
  GTGTGAACTC AGACTCACTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38201158	NES09615357	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28098620					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38201158	NES09615357	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:74160758 () rs orientation: forward

Symbol	Name	Function Class
Kdm4c	lysine (K)-specific demethylase 4C	mRNA-UTR
Tssr37634	transcription start site region 37634	40 bp downstream