rs28102633 SNP Detail

Summary

• ID
  rs28102633
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:82213768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTACTTT TAATTAAAAT
  TTTAAGAGAC ACAGAGGCAG CATGTGTCTG CCCATGCACA CTATAGATCT GTCAATACGA
  GAAATGTGTT GAACAAGGCT AATGTCCGAA AGCACCATGC ATGTTCCCAG CACCCTGATG
  GCACTTCTCT GAAGAGCGAG CGGGTTTTCC TAGCCTACCT GGCATTCCCA GCCTGTACAC
  R
  GGGAGCTTTA CCCTTGTGAC ATGGATTTCC CTGCCTCTTT GTCTCTACGA TGCAGATTGT
  ATAGAACCGT TTGTACACCC TATGGGTTCT TGATGCAACC AGTAATTTTA AATAAATAAT
  CTGACCTCTG AGGAGGCTGC AGCTAAGCCA ACCTAAGTGC TGTGTTTTCA ATATTTTTTT
  TATTTTTTAT TTTTTTTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38228274	NES09614003	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28102633					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38228274	NES09614003	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82213768 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nfib	nuclear factor I/B			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr42222	transcription start site region 42222			1834 bp upstream
Tssr42223	transcription start site region 42223			1634 bp upstream
Tssr42224	transcription start site region 42224			1145 bp upstream
Tssr42225	transcription start site region 42225			1073 bp upstream
Tssr42226	transcription start site region 42226			846 bp upstream
Tssr42227	transcription start site region 42227			805 bp upstream
Tssr42228	transcription start site region 42228			738 bp upstream
Tssr42229	transcription start site region 42229			572 bp upstream
Tssr42230	transcription start site region 42230			141 bp upstream
Tssr42231	transcription start site region 42231			346 bp downstream
Tssr42232	transcription start site region 42232			719 bp downstream
Tssr42233	transcription start site region 42233			1109 bp downstream
Tssr42234	transcription start site region 42234			1145 bp downstream