rs28102634 SNP Detail

Summary

• ID
  rs28102634
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:82213126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGAATAT ATATATATTT
  ATATATGTAT ATTAAAAAAA ATCCCCTGTC CATCTCTCAG TACACAAAAG GACCTCATCA
  CACTGCAAAA ATAGCAGTAC CCACTTTGGT CAATTAAAAC AAACAAACAA ATAAACAAAC
  AAACAAAAAA AGCATACATT ATTTCTTTTT TAAATCTGTG TACTTACCTA TAATAACCAA
  Y
  ACAGCTAAAA GCACTACCTA CATAGGCAAA ACTTGGTATT GCATAATTCG TATAAATTTG
  AAACCCCTCC CCCCCAAATA TTAATTGGAA GATGAAAAAC ATGAAAGGTT AATAGAAAAA
  ACACCAAAAA TACTGAAAAT ATTGCTGGTC GATTACAATT TTTAAGCGGC AACTATACAC
  AGCCATGATA TGCTTTATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38228275	NES09614001	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28102634					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38228275	NES09614001	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82213126 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nfib	nuclear factor I/B			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr42221	transcription start site region 42221			1619 bp upstream
Tssr42222	transcription start site region 42222			1192 bp upstream
Tssr42223	transcription start site region 42223			992 bp upstream
Tssr42224	transcription start site region 42224			503 bp upstream
Tssr42225	transcription start site region 42225			431 bp upstream
Tssr42226	transcription start site region 42226			204 bp upstream
Tssr42227	transcription start site region 42227			163 bp upstream
Tssr42228	transcription start site region 42228			96 bp upstream
Tssr42229	transcription start site region 42229			within coordinates
Tssr42230	transcription start site region 42230			481 bp downstream
Tssr42231	transcription start site region 42231			988 bp downstream
Tssr42232	transcription start site region 42232			1361 bp downstream
Tssr42233	transcription start site region 42233			1751 bp downstream
Tssr42234	transcription start site region 42234			1787 bp downstream