rs28102638 SNP Detail

Summary

• ID
  rs28102638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:82211956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCTGCAT CCTAGAATCC
  CACTGTGCTA ACCAGCATGT GGTCATGAAT GGACTAGTCA GATTTAATTC CCGGGCTTCT
  GAGCATCGTT CTCATGAACT CACTATTAAA TGATCTGCTA TGCATACACT TGACAGTTTA
  TTTACTAGGG CAGGGCCTGG GGTGGGGCTG GGGGTGGGGT CAAGAGAGCT TCTTTACAGC
  Y
  GACTGCGTAT GTCACTAATT CCTAAAGATC TCCTTGGAGC AATGGATACA CTCAATAGGA
  CCAGGTGGGG GATGGGGAAA AGACAAAATA AAATTGGTCT CTATTCACCT GTAGTCCTCA
  GGGGAAATTA ACTCAAATAT ATACTTGAAG TACCACCCGT TCAAATCAAC CCCCACCATC
  ATTATCAAAC ACACTTAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38228279	NES09613989	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28102638					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38228279	NES09613989	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82211956 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nfib	nuclear factor I/B			mRNA-UTR
				Noncoding-Transcript-Variant
Rr594308	regulatory region 594308			1905 bp distal
Tssr42221	transcription start site region 42221			449 bp upstream
Tssr42222	transcription start site region 42222			22 bp upstream
Tssr42223	transcription start site region 42223			164 bp downstream
Tssr42224	transcription start site region 42224			654 bp downstream
Tssr42225	transcription start site region 42225			711 bp downstream
Tssr42226	transcription start site region 42226			944 bp downstream
Tssr42227	transcription start site region 42227			992 bp downstream
Tssr42228	transcription start site region 42228			1063 bp downstream
Tssr42229	transcription start site region 42229			1167 bp downstream
Tssr42230	transcription start site region 42230			1651 bp downstream