rs28102640 SNP Detail

Summary

• ID
  rs28102640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:82211832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAAAGAAT ACTGTGTCCT
  GTAGGGTTGC ACTCTTCAGC AAATAGGTCA GAAAGACACT ATGAGCTTGG CTGAGAGGAT
  GTGTTATCTG CAAAGCAAGT AACAGACAAG GCTGGCCTTT CTTAGAACCT GCATCCTAGA
  ATCCCACTGT GCTAACCAGC ATGTGGTCAT GAATGGACTA GTCAGATTTA ATTCCCGGGC
  Y
  TCTGAGCATC GTTCTCATGA ACTCACTATT AAATGATCTG CTATGCATAC ACTTGACAGT
  TTATTTACTA GGGCAGGGCC TGGGGTGGGG CTGGGGGTGG GGTCAAGAGA GCTTCTTTAC
  AGCCGACTGC GTATGTCACT AATTCCTAAA GATCTCCTTG GAGCAATGGA TACACTCAAT
  AGGACCAGGT GGGGGATGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38228281	NES09613987	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28102640					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38228281	NES09613987	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82211832 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nfib	nuclear factor I/B			mRNA-UTR
				Noncoding-Transcript-Variant
Rr594308	regulatory region 594308			1781 bp distal
Tssr42221	transcription start site region 42221			325 bp upstream
Tssr42222	transcription start site region 42222			82 bp downstream
Tssr42223	transcription start site region 42223			288 bp downstream
Tssr42224	transcription start site region 42224			778 bp downstream
Tssr42225	transcription start site region 42225			835 bp downstream
Tssr42226	transcription start site region 42226			1068 bp downstream
Tssr42227	transcription start site region 42227			1116 bp downstream
Tssr42228	transcription start site region 42228			1187 bp downstream
Tssr42229	transcription start site region 42229			1291 bp downstream
Tssr42230	transcription start site region 42230			1775 bp downstream