rs28102642 SNP Detail

Summary

• ID
  rs28102642
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:82211547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCGTGCAA GACCTGCAAA
  AGTGGGGCCC TTCGTCAGAA TATACTTCCT GGTTTTAAAA AAAAATAGAA GGCTAAACGT
  GGATTCGAGA TTTTCTATAG TAGTGCTTTT TTAATAAGTT TATCTCAAAG AAAAGAAGAA
  ACATTGAACT AGGTTAAAAA AAAAAAAAAA AAAGGAACAG TTGCCCTAGG CCTCTGTACC
  Y
  AAGAGGCAGG CAGGGATGCC CACAGTGTGC CATGTACTTT AGCAACAATT GTTCATTCAC
  GGGTGACAAG GAGAGGGGAC TGCCTGGAAA GAATACTGTG TCCTGTAGGG TTGCACTCTT
  CAGCAAATAG GTCAGAAAGA CACTATGAGC TTGGCTGAGA GGATGTGTTA TCTGCAAAGC
  AAGTAACAGA CAAGGCTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38228283	NES09613985	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28102642					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38228283	NES09613985	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82211547 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nfib	nuclear factor I/B			mRNA-UTR
				Noncoding-Transcript-Variant
Rr594308	regulatory region 594308			1496 bp distal
Tssr42221	transcription start site region 42221			40 bp upstream
Tssr42222	transcription start site region 42222			367 bp downstream
Tssr42223	transcription start site region 42223			573 bp downstream
Tssr42224	transcription start site region 42224			1063 bp downstream
Tssr42225	transcription start site region 42225			1120 bp downstream
Tssr42226	transcription start site region 42226			1353 bp downstream
Tssr42227	transcription start site region 42227			1401 bp downstream
Tssr42228	transcription start site region 42228			1472 bp downstream
Tssr42229	transcription start site region 42229			1576 bp downstream