rs28102643 SNP Detail

Summary

• ID
  rs28102643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:82211247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAGCTGC CCACCCGAAA
  ATTACCCGAT AACTATATTG CTATACTTAA GGTTTTGCCA TGTCTTTATG TACAGTCTCC
  TTCACTGCCT CTCAGGTTTT TTTTCCCCCC TTAGGCAAGT CTCGACTGCT CACGTCACTT
  CGGGAAACAC ACACTTTAGA GGCACTGTGA GTGGTGGGCT GCAAAGCAAT ACAACAAAGG
  Y
  TGGACAGTGC CATGAGCTGG TGGTGGGAGA CACCACCTCC TAACAGATGC CCTTGGGTGA
  CCTTCACCAT CCTGAAGCTC TGCAGTCTGG GTAAGGAAGG GGCGTGCAAG ACCTGCAAAA
  GTGGGGCCCT TCGTCAGAAT ATACTTCCTG GTTTTAAAAA AAAATAGAAG GCTAAACGTG
  GATTCGAGAT TTTCTATAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38228284	NES09613984	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28102643					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38228284	NES09613984	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:82211247 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nfib	nuclear factor I/B			mRNA-UTR
				Noncoding-Transcript-Variant
Rr594308	regulatory region 594308			1196 bp distal
Tssr42220	transcription start site region 42220			1896 bp upstream
Tssr42221	transcription start site region 42221			246 bp downstream
Tssr42222	transcription start site region 42222			667 bp downstream
Tssr42223	transcription start site region 42223			873 bp downstream
Tssr42224	transcription start site region 42224			1363 bp downstream
Tssr42225	transcription start site region 42225			1420 bp downstream
Tssr42226	transcription start site region 42226			1653 bp downstream
Tssr42227	transcription start site region 42227			1701 bp downstream
Tssr42228	transcription start site region 42228			1772 bp downstream
Tssr42229	transcription start site region 42229			1876 bp downstream