rs28103710 SNP Detail

Summary

• ID
  rs28103710
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:83662339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTAGATA TAAACTGTGA
  GTGTGACTGC ACTCTATAGA TTACAGGGCG AAACCTGGAA ATCACAGAGT AGGGCGCCTG
  AGATCTTAGA ACAGCAAACC TATTGCTTCC GGGTTGATGA CATCACTTAC GTATGGTGAG
  AAGATGAAGT CCAAAGTACA CATATTGGCT TGCTTGAATA TCTACTAATA GTGTTTTTTG
  R
  AAAGTTGTAC ACCTGTATAA CATTGTATCT CCATATTAAA TGTATATAAT TTTTACTTCT
  TTTTTTTTTT CCATTTTTAT TAGGTATTTA ACTCATTTAC ATTTCCAATG CTATACCAAA
  AGTCCCCCAT ATCCACCCAC CCCCACTCCC CTGCCCACCC ACTCCCCCTT TTTGGCCCTG
  GTATTCCCCT GTACTGGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38222158	NES09612265	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28103710					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38222158	NES09612265	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:83662339 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc171	coiled-coil domain containing 171			Intron
				Noncoding-Transcript-Variant
Gm26968	predicted gene, 26968			within coordinates