rs28103714 SNP Detail

Summary

• ID
  rs28103714
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:83661963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCATAGCCT TAAAATGTCA
  CTAAAACATG CCGATCATGG GAACCCATTT AAGCTTGTAG AGATATATGC TATAGTATAT
  TTAATAGAAA AATACCATTT CAACGTCAAC AGCTATGTAA ACACAGAGGA TGCGTCCCTT
  TTACCACGTA ACAGGTGCAC ATGCACACGT TTTGAAATTC AAATTGATCA GTTCTGTTAC
  R
  CTCTCATTTG TTTCCCCATA ACAGGGTTTA TGGACTTTTT TAAGACAGGA TTTTATTCAG
  CGGTATAATG AAAACAATTA AGGGAACACA TGATTCTAAT TGATTCCCTG TTTGTGTATA
  GAATTTTTAG TTCATGAAAA TGTAAAAATA TTCATTAACA TTTTAAAACA GGCTCCTGTT
  AGATATAAAC TGTGAGTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38222162	NES09612259	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A	G	A	A	G		G	A	A	G		G
ss321189665	CHEV_4_83389630	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28103714					SNP	G	A	A	A	G	A	G	A	A	G	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38222162	NES09612259	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:83661963 () rs orientation: forward

Symbol	Name	Function Class
Ccdc171	coiled-coil domain containing 171	within coordinates
Gm26968	predicted gene, 26968	within coordinates