rs28103719 SNP Detail

Summary

• ID
  rs28103719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:83661572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCTGGGT TTTAGCCCTG
  GATAATACAG TGCTAGAAAA CAAAAGTGCA GCTGTCTCTC TTTGAAATTC TCTGATATAC
  CCTCAAAAAG AAGACTCTTA ACTCCACACT CTAAGTGTAT ATTTTATTGA GGAGCCTCGG
  AAGCACAGGC TTCTGTGTAG CCTCAAATTA TGCATATCCA GTGCTCATGT TGGCACTGCG
  Y
  GCCTGAATTA ATGCAGAGCA CAAAATTGTT TATTTAAAAG TTTCACACAG TTGCATTATT
  TGTTTCTATA TTATTTGTCT TTTACCACCT CCAACTCCAC TGGCTCCCAC CCTGATTTTG
  CTTTGTGGAT TCTATTGATA TTACAAGTAA TATTTCCATA AGGAAATGTT GGCATACAAT
  CAGTATGTGT ATCATAGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38222167	NES09612246	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28103719					SNP	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38222167	NES09612246	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:83661572 () rs orientation: forward

Symbol	Name	Function Class
Ccdc171	coiled-coil domain containing 171	within coordinates
Gm26968	predicted gene, 26968	342 bp upstream